Trouble with morphometrix update about collatrix HOT 4 CLOSED

Hi! Just to clarify - were you using morphometrix 1.0.1 before? Also, there are two separate issues here right? 1. Some files get the duplicate object error, and 2. some files can't get read in at all. What do you mean by "unable to recognize them as morphometrix files"? Could you share a screenshot of the error message?

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Hi Clara, just following up on the previous question. Error code is as follows for files from the 1.0.2 morphometrix:

(myenv) C:\Users\jakel> python -m collatrix
yes Animal ID in folder name
no safety
no subset list
these csvs were not morphometrix outputs: []
C:/Users/jakel/Desktop/mes 2\mn200914_1.csv
Traceback (most recent call last):
File "C:\Users\jakel\anaconda3\envs\myenv\lib\runpy.py", line 197, in run_module_as_main
return run_code(code, main_globals, None,
File "C:\Users\jakel\anaconda3\envs\myenv\lib\runpy.py", line 87, in run_code
exec(code, run_globals)
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\collatrix-1.0.7-py3.9.egg\collatrix_main.py", line 180, in
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\collatrix-1.0.7-py3.9.egg\collatrix_main.py", line 39, in init
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\collatrix-1.0.7-py3.9.egg\collatrix_main.py", line 153, in initUI
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\collatrix-1.0.7-py3.9.egg\collatrix\collatrix_functions.py", line 42, in collate
File "C:\Users\jakel\anaconda3\envs\myenv\lib\site-packages\pandas\core\indexes\base.py", line 4104, in getitem
return getitem(key)
IndexError: index 0 is out of bounds for axis 0 with size 0

running the most recent update of collatrix and morphometrix, where have I gone wrong?

Thank you,

-Jake

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morphometrix output was in an outdated format that the current collatrix wasn't designed to handle. a version of collatrix that can handle all versions of outputs is in progress.

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