TypeError: read_csv () got an unexpected keyword argument 'prefix' about collatrix HOT 7 CLOSED

Hi, can you provide a bit more information? If you could attach a screenshot of the terminal/command prompt window with the full error message and one of the morphometrix output csvs you're trying to collate, that would be great. Thanks!

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Hi Clara,

Thank you for your quick reply, I have attached the files below.

DJI_0026.csv

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hi! thanks for providing that extra info. I think you have a newer version of the pandas package installed that what I developed collatrix in. In your terminal window try typing pip install pandas==1.4.0 and running that, then try re-running collatrix. Hopefully that should do the trick!

from collatrix.

Hi Clara,

I was able to install the pandas package with the line of code that you recommended and re-run collatrix, but I received the same error (re: screenshot from above).

Thank you

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hmm... try pip install numpy==1.21.2, and then re running collatrix

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Hi Clara - I am more than happy to make a time to meet virtually if it's easier to share my screen. I can send you an email with my contact information.

Unfortunately, I received more error messages. It was too long to screenshot the whole output. I just included the top and bottom lines.

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Thanks for the patience and help Clara! This worked!!

1. conda create –-name ccx python=3.8
2. conda activate ccx
3. pip install pyqt5==5.9.2 pandas==1.4.0 numpy==1.21.2
4. Then the pip install for collatrix from github
5. Then try running collatrix

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