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  • 👋 Hi, I’m @cbouyio or Costas Bouyioukos an assistant professor of bioinformatics at the University of Paris (Université Paris Cité)
  • 👀 I’m interested in bioinformatics, computational and systems biology, multi-omics and regulatory analysis and Machine/Deep learning applications to biology
  • 👀 I manage the @parispeigenetics (https://github.com/parisepigenetics) GitHub organisation for research projects in the department of epigenetics and the @UParisCit-bioinfo (https://github.com/ParisDiderot-Bioinfo) for my teaching
  • 🌱 I’m currently learning, deepML models architecture for multi-omics analyses problems
  • 💞️ I’m looking to collaborate on, computational methods for metagenomics and single cell analyses as well as 3-dimensional data representation and visualisation
  • 💞️ I'm always particularly interested in complex biological networks modelling and reconstriction
  • 📫 How to reach me: [email protected] personal email, [email protected] professional email

Costas Bouyioukos's Projects

analysescode icon analysescode

Various analysis code (mostly statistics with R) as well as shell scripts for specfic tasks.

cbouyio icon cbouyio

Config files for my GitHub profile.

cbouyio.github.io icon cbouyio.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

deap-mono icon deap-mono

Distributed Evolutionary Algorithms in Python (monophyletic reproduction fork)

networkx icon networkx

Official NetworkX source code repository. Forked it to implement an N, M (number of nodes, number of edges) power law random graph algorithm as well as an exponential distribution random graph algorithm.

ngsenrichmentsimulator icon ngsenrichmentsimulator

A computational framework to simulate various staeps in sequencing enrichment and mining of NGS reads for sequences of interest. A set of pure python modules are representing the various precedures, a run script is provided to conduct the experiments and a control parameters file to set the experimental parameters. We intent to use the framewrok as a tool for the general plant (and not only) community to enchance the studies of sequence enrichment approaches.

python_goodies icon python_goodies

A set of python modules for (mostly) typical everyday jobs initially developed at TSL

rna_feat_ext icon rna_feat_ext

Software tools to compute and extract mRNA's features from a list of ENSEMBL gene IDs.

shiny-your-gene-list icon shiny-your-gene-list

An R-shiny interactive application to explore and valorise gene sets and lists from high throughput genomics experiments.

solexa icon solexa

Set of modules for working with htgs reads and related software, maq, Bowtie etc

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