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Reference MATLAB and Python implementations of the RADISTAT algorithm

License: BSD 3-Clause Clear License

Python 11.28% Jupyter Notebook 56.56% MATLAB 31.88% Dockerfile 0.28%
matlab python radiomics feature-extraction itcr computational-imaging radiomics-features radiomics-feature-extraction cancer-imaging-research spatial texture

radistat's Introduction

RADIomic Spatial TexturAl descripTor (RADISTAT)

RADISTAT is a novel radiomic approach driven by the hypothesis that quantifying spatial organization of texture patterns within an ROI could allow for better capturing interactions between different tissue classes present in a given region; thus enabling more accurate characterization of disease or response phenotypes.

Reference MATLAB and Python implementations of RADISTAT are provided. Basic installation instructions for Python are also provided within the relevant subfolder.

Further details can be found in the associated manuscript:

Antunes, JT, Ismail, M, Hossain, I, Wang, Z, Prasanna, P, Madabhushi, A, Tiwari, P, Viswanath, SE, “RADIomic Spatial TexturAl descripTor (RADISTAT): Quantifying spatial organization of textural heterogeneity on imaging associated with tumor response to treatment”, IEEE Journal of Biomedical and Health Informatics, 2022 (PubMed)(IEEE)

Please cite this publication if you make use of this implementation.

Any issues or suggestions can be raised via the Issues tab.

radistat's People

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radistat's Issues

Incorrect file versions

Following the demo line-by-line in the python implementation results in errors

  • radistat.py appears to be drawing from scikit-learn.segmentation.slic rather than slic_supervoxels.slic
  • ^ because of this, there are incorrect arguments passed to slic() in radistat.py
  • the demo showcases a 2D slice but the code base is not setup to handle 2D instances

Question

Hello, I read your paper. That is excellent. But I have a question, how can we get the feature_map.mha and the mask.mha.
I would be very grateful if you reply.

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