make compile (inside project main directory)
make hexdump (will generate an main.hex file if succesful)
make upload (takes main.hex file and upload to microcontroller (by default using avrdude with default uploader flags and to the port /dev/ttyUSB0, for another set of configurations set the UPLOADER AND UPLOADERFLAGS via command line for now))
Run make compile and change SRC_FILE to the test file containing a main function. Follow the rest of the instructions above as normal