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spatial_anlys_tumor_het's Introduction

Spatial Analysis of Tumor Heterogeneity:

About:

Repository Structure:

Accessing Data:

You can access the entirety of the human-reference data (still working on the others) from the following link. The data being used in the analysis can be broken down into a few parts:

  1. Gene Expression Data
  • The main gene expression data for each sample will be in the form of a .csv
  • Naming convention: sampleName_reference_mat.csv
  • E.g.: F8_37_human_mat.csv
  1. Sample Projection Data
  2. Seurat Objects

Using new SpaceRanger Output Data:

An Aside on Normalization:

spatial_anlys_tumor_het's People

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