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Does KmerGo support pair-end sequencing data? If so, how does KmerGo merge R1 and R2 sequences? Does KmerGo merge R1 and R2 sequences through fastq-join? or are there any algorithms or pipelines for merging two sequences into one fastq?

Hello,

Thank you for this tool. I have encountered an issue running it on assembled genomes. The first step finishes, and the second step (Kmer union) begins, but almost immediately returns the status as -9, with the error "Parameters error? Processes break down."

The test files run successfully so I'm not sure what I am doing wrong.

Thanks in advance for your help!

老师，您好，我想问一下双端测序结果如何分组输入

Hello Sir:
Thank you for that I can classified my fastq by using you software which are failed in jellyfish. There still some more needs. Could you please tell me the way to get the classified original sequences which corresponding to the specific kmer ?

Hello,

Trying to understand the output of KmerGO. What's the distinction between kmer vs contig? Are contigs just any sequence found that was greater than the threshold set for kmer?

For example, the output contains case- and/or control- specific kmers and contigs. I used the default setting for kmer length (40), so is a contig considered to be any sequence found in either the case or control that has a length greater than 40?

Thanks for your clarification!