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agingmousebrainccinx

Predicted cell-cell interactions of the aging mouse brain

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

cellcountcv

This repository contains the code and examples accompaining our preprint https://doi.org/10.1101/867218

circlize

Circular visualization in R

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cnnmirtronpred

concept-maps

Concept maps for all things data science

cytoscape

Cytoscape: an open source platform for network analysis and visualization

datascience-box

Data Science Course in a Box

dca

Deep count autoencoder for denoising scRNA-seq data

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

dgca

Differential Gene Correlation Analysis

easyplotting.jl

Graphical/statistical plotting GUI package for quick data visualisation and exploration.

ebimage

:art: Image processing toolbox for R

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

genenet-

genomic-data-science

Genomic data science specialization

ggally

R package that extends ggplot2

gganimate

A Grammar of Animated Graphics

gne

This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"

h19x_encoded_micrornas_induced_by_il_4_in_adipocyte

H19X_encoded_microRNAs_induced_by_IL_4_in_adipocyte_precursors_regulate_proliferation_to_facilitate_differentiation

he2rna_code

Train a model to predict gene expression from histology slides.

in_vivo_proximity_interactome_zuc_drosophila

In vivo proximity labeling identifies the interactome of the endoribonuclease Zucchini in Drosophila ovary

lucnorm

R code for the normalization of reporter data from transient transfection experiments

mircomb

An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data

monocle2-rge-paper

Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)

multimir

Development repository for the multiMiR database's R API

nature-neuroscience-2018-mirna-mrna-paper

Regulation of Cell-Type-Specific Transcriptomes by miRNA Networks During Human Brain Development

pathfindr

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

python

Course Files for Complete Python 3 Bootcamp Course on Udemy