christacaggiano Goto Github PK

gembs

GEMBS is a bioinformatic pipeline designed for hightroughput analysis of DNA methylation from whole genome bisulfites sequencing data (WGBS).

genomics_conference_notes

gradient-boosting

gwas-eqtl

analysis for UCSF BMI 206 based on Hormozdiari et al (2016) Am J Hum Genet

helenberger

Academic Webpage for Helen Berger

heritability

hrbrthemes

:lock_with_ink_pen: Opinionated, typographic-centric ggplot2 themes and theme components

human-hormone-seasonality

Code and data repository for the paper "Hormone seasonality in medical records suggests circannual endocrine circuits" by A. Tendler, A. Bar, N. Mendelsohn-Cohen, O. Karin, Y. Korem Kohanim, L. Maimon, T. Milo, M. Raz, A. Mayo, A. Tanay, U. Alon

ibd

code for analyzing IBD networks

ibd-mapping

Code for IBD mapping in EHR studies of monogenic disease

ibd_calling

images

graphs n stuff mostly for making stable markdown urls

intro_to_git

jupyter_notebook_practice

exercise to practice jupyter notebook

largest_class_at_brandeis

python script to find the largest classes at brandeis

led-neuron-firing-model

LED neuron firing model developed for arduino as a part of the Brandeis Art Science Initiative

lung_transplant_cfdna

code for lung transplant cfdna project

machine_learning_exercises

Machine learning sample jupyter notebooks

methodstbs

Targeted Bisulfite Sequencing for Biomarker Discovery

methylation-reference-matrix

generates reference matrix of average beta methylation values

methylation_analysis

Intro to methylation analysis

methylation_processing

simple scripts to process large methylation matrices

misingnoglic.github.io

My website that I finally decided to make

ml-from-scratch

Machine Learning From Scratch. Bare bones Python implementations of Machine Learning models and algorithms with a focus on transparency and accessibility. Aims to cover everything from Data Mining to Deep Learning.

multilableaderboard

This is a paper reading tracker app for multiple labs to compare their average reading

mybaits-probe-design

cfDNA methylation probe design from mybaits targeted sequencing

neural-net

Artificial neural network to predict transcription factor binding.

pc-confounding

Simulation code for Dahl et al 2017

phecode-assoc

pregnancy_cfdna