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paper_2022_metasurveillance's Introduction

Global disparities in SARS-CoV-2 genomic surveillance

Supplementary files from the study by Brito, A. F., et al. "Global disparities in SARS-CoV-2 genomic surveillance." medRxiv (2021).

Files

  • matrices/matrix_cases_unit.tsv = Matrix of weekly COVID-19 case counts per country.

  • matrices/matrix_genomes_unit.tsv = Matrix of weekly genomes counts per country.

  • matrices/weekly_sampling_proportions.tsv = Weekly proportions of sequenced cases per country.

  • matrices/matrix_incidence_week.tsv = Matrix of weekly incidence (cases per 100,000 habitants) per country

  • matrices/percseq_frequency.tsv = Table with percentage of sequenced cases and sampling frequency (proportion of weeks with at least one genome) per country.

  • matrices/genomes_submission_delays.tsv = list of turnaround times (in days), per submitted genome, per month.

  • matrices/UN_country_population_2020.tsv = Population per country, according to UN statistics.

  • matrices/income_classification_worldbank.tsv = Income class per country, as defined by the World Bank.

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