This repository contains working notebooks and deliverables for the CMI Onboarding Challenges.

The challenge data bundle can be downloaded from here. Once downloaded, all the notebooks should run if you unzip the data to match this folder structure:

.
├── README.md
├── comments.md
├── data
│   ├── C-PAC_Derivatives
│   │   ├── abcd-options
│   │   └── preproc
│   ├── Raw_Data
│   │   ├── HNU_1
│   │   └── Site-SI
│   └── osfstorage-archive.zip

• what_is_this.ipynb: A Jupyter notebook crawling through the challenge data bundle.
• when_given_show_us.ipynb: A Jupyter notebook containing some investigation and analysis of processed data.
• comments.md: questions, comments, feedback on the challenges.
• outputs: A directory of generated images and downloaded templates, parcellations, etc generated and used in the notebooks.