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cgface's Introduction

CGFace

Background

Documentation

Installation

You can install cgface from source:

$ git clone https://github.com/Clinical-Genomics/cgface && cd cgface
$ pip install --editable .

You also need a YAML config file describing how to connect to the CG instance. It should contain information like this:

---
host: https://clinical.api.com

Getting information

You can quickly get information about samples. For a single sample:

$ cgface apptag WGSPCF030
$ cgface apptag WGSPCF030 target_reads

Using the API

You can also use the API:

from cgface.api import CgFace

def get_apptag(url, tag_name, key):
    cgface_obj = CgFace(url=url)

    print(cgface_obj.apptag(tag_name=tag_name, key=key))

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