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machine-learning

Content for Udacity's Machine Learning curriculum

machine_learning_examples

A collection of machine learning examples and tutorials.

machinelearning-1

My blogs and code for machine learning. http://cnblogs.com/pinard

medical-data

用于机器学习的Medical数据集

meth-report-generator

甲基化报告自动化

methylation-reference-matrix

generates reference matrix of average beta methylation values

ml-from-scratch

Machine Learning From Scratch. Bare bones Python implementations of Machine Learning models and algorithms with a focus on transparency and accessibility. Aims to cover everything from Data Mining to Deep Learning.

mm-public-scripts

Short scripts to demonstrate data available from MolecularMatch API (api key needed). Data includes clinical trials, drugs, publications, molecular information, bioinformatics, report generation and more.

mondo

Pipeline for building mondo

multi_padlock_design

Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling

my_project

各种测试

mybaits-probe-design

cfDNA methylation probe design from mybaits targeted sequencing

mydna

My own public DNA data and analysis

mygene.info

MyGene.info: A BioThings API for gene annotations

mysql-tutorial

MySQL入门教程（MySQL tutorial book）

myvariant.info

MyVariant.info: Variant Annotation as a Service

ncbi-xml-parse

Parse PubMed XML file; Parse PMC XML file; Parse GEO XML file;

ncrf

癌症转移检测-切片图像分类Cancer metastasis detection with neural conditional random field (NCRF)

neoantigen-vaccine-pipeline

Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

neural-net

Artificial neural network to predict transcription factor binding.

nextgenseq_pipeline

Exome/Capture/RNASeq Pipeline Implementation using snakemake

ngs-pipe

NGS-pipe: next-generation sequencing pipelines for precision oncology

nlp-progress

Repository to track the progress in Natural Language Processing (NLP), including the datasets and the current state-of-the-art for the most common NLP tasks.

nlp_base

自然语言基础模型

oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes cutting edge monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

oligominer

Genome-scale design tool for oligo hybridization probes

oncotator

open-semantic-etl

Python based Open Source ETL tools for file crawling, document processing (text extraction, OCR), content analysis (Entity Extraction & Named Entity Recognition) & data enrichment (annotation) pipelines & ingestor to Solr or Elastic search index & linked data graph database

pcgr

Personal Cancer Genome Reporter (PCGR)

personalized_medicine