I had to add a couple of lines to get the install.py script to work. I needed to
import numpy

and

include_dirs = [numpy.get_include()]

See below for the full file:

from distutils.core import setup, Extension
from distutils.sysconfig import get_config_var
from distutils.extension import Extension

import os
import sys
import numpy

get the version loaded as vstr

execfile('ptsa/versionString.py')

set up extensions

ext_modules = []
edf_ext = Extension("ptsa.data.edf.edf",
include_dirs = [numpy.get_include()],
sources = ["ptsa/data/edf/edf.c",
"ptsa/data/edf/edfwrap.c",
"ptsa/data/edf/edflib.c"],
define_macros = [('_LARGEFILE64_SOURCE', None),
('_LARGEFILE_SOURCE', None)],)
ext_modules.append(edf_ext)

define the setup

setup(name='ptsa',
version=vstr,
maintainer=['Per B. Sederberg'],
maintainer_email=['[email protected]'],
url=['http://ptsa.sourceforge.net'],
packages=['ptsa','ptsa.tests','ptsa.data','ptsa.data.tests',
'ptsa.data.edf','ptsa.plotting','ptsa.plotting.tests',
'dimarray','dimarray.tests'],
ext_modules = ext_modules
)

Thanks for making all these useful algorithms available!

I see that you recommend installation through conda. Is there any reason that you don't want to upload at least the source code to pypi, so that we can do pip install ptsa?

Thanks again!