|- code/            # all programmatic code relating to the project
|  +- templates/    # scripts for generating template files
|
|- data/            # all data from the study
|  |- raw_internal/ # raw data generated in-lab or by collaborators, will not be altered
|  |- raw_external/ # data from third-party sources, databases etc, will not be altered
|  |- intermediate/ # intermediate data on its way from raw to final
|  +- final/        # final data for figures/visualizations
|
|- doc/             # documentation for the study and other explanatory material
|
|- results          # all output from workflows and analyses
|  |- figures/      # graphs, likely designated for manuscript figures
|  +- pictures/     # diagrams, images, and other non-graph graphics
|
|- .env             # file to store passwords and usernames needed for the scripts. This
|                     will not get synced to GitHub.
|- .gitignore       # files that will not sync to Github
|- LICENSE          # license
|- README.md        # the top level description of content
|- requirements.txt # the requirements file for reproducing the analysis environment,
|                     e.g. generated with `pip freeze > requirements.txt`
+- to-dos.md        # pending things that are yet to be done