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View Code? Open in Web Editor NEWDisplay data using Elasticsearch and utilize the bootstrap layout
License: Other
Display data using Elasticsearch and utilize the bootstrap layout
License: Other
Clicking Login link from http://flagella.crbs.ucsd.edu page redirects to this broken link:
Downloaded file name is not correct on the ccdb pages. The file name is changed to CCDB_18_full_resolution instead of the real file name with extension.
There needs to be a wiki page written up describing how to install this website on a machine.
Missing chromosome link /browse/cellcomponent/Chromosome
On most sites when multiple pages are available for a given search there is usually a line like this with links:
first previous 2 3 4 next last
On this page: http://flagella.crbs.ucsd.edu/images?k=cell&simple_search=Search
Every possible page is given its own link. (see screenshot)
The add to photobox link is broken: http://flagella.crbs.ucsd.edu/images/16217
Remove all the headlines.
Add - New website design. Let us know what you think here.
where here is a link to Guest book.
The display image on the 35451 page looks fuzzy compared with http://www.cellimagelibrary.org/images/35451
To match cell image library main menu rename the main menu item Data Set to Data Sets
/images?k=plasmid&image_search_parms%5Bncbi%5D=Bacteria&advanced_search=Advanced+Search
Increase the font to match current page and spread the terms across the bar.
Remove home button from the bar.
Move the Email button to the top of the page next to the Submit button.
Add the separator bar between terms like on the current page.
Add Pivot view to the Navigation Bar.
See /images/43901
Clicking "Hide Thumbnails" does not appear to work (at least for chrome browser).
Link to page: http://flagella.crbs.ucsd.edu/browse/cellprocess
Screenshot after clicking link:
Go to http://flagella.crbs.ucsd.edu/images?k=ccdb+maryann&simple_search=Search
and then click page 2 . The URL will expand:
The search results for "Segment" are misaligned on the first page.
On this page:
http://flagella.crbs.ucsd.edu/images/11924
Screen shot with broken links in red box (only link that appears to work is the Pubmed one):
My last name is spelled incorrectly on this page: http://flagella.crbs.ucsd.edu/pages/about and on production as well. The spelling should be Churas
Advanced Search page just says "Coming soon"
The links on front page in red box
: http://flagella.crbs.ucsd.edu/
redirect to production. (see screenshot)
Help link on top of this page is broken http://flagella.crbs.ucsd.edu/
It's currently pointing to the old ccdb server. For example, http://ccdb.ucsd.edu/ccdbdata/e1cb3a1_p/e1cb3a1.pic . It should be pointed to the new repository on iruka.
Get or make new icons for reconstruction, segmentation, and 2D icon
Clicking 'Sort by Image Count' does not seem to work on this page:
http://flagella.crbs.ucsd.edu/browse/cellprocess
Move Advanced search to below the Search box flush left to the left edge of the box.
Above the Search box have links to About, Licensing, Notification of Use, Contributors, Interactive Cells, Donate Button, Guest Book, Help, Submit, and the email icon.
We will no longer have a link to In the News but keep the page there in case we decide to bring it back.
Move the Twitter bird, Facebook logo and LinkedIn icon to the top right of the page below the Blue Naviagtion Bar and add,
Tumblr (get icon) - https://cellimagelibrary.tumblr.com
Pinterest (get icon) - https://id.pinterest.com/CILImage/cell-image-library/
Doccheck (get icon) - http://www.doccheck.com/com/profiles/103-cell-image-library/tab/info
Instagram (get icon) - https://www.instagram.com/cell_image_library/
Add the link and Apple App store link below the link icons on the right side of the page below the blue navigation bar.
Center both left and right and up and down and equal space all the logos at the bottom - ASCB, CCDB, NIF, Data Citation Index and Labby Award.
Add reconstruction, segmentation, and 2D icon as searchable on the advanced search page under Image Attributes
The CIL logo in the header is not centered. Can you make the logo look more natural in the header?
In order to do that, you need to edit
Missing onto name - see images/41363
When doing a search with lots of results
(example: http://flagella.crbs.ucsd.edu/images?k=cell&simple_search=Search)
Way too many next and previous page links appear. As seen in attached screenshot. This should be done in a more simple fashion maybe something like this:
start << 1 | 2 | 3 | 4 | >> end
See /CIL_RS/index.php/rest/simple_ontology_expansion/mouse_gross_anatomies/Name/TS20,extraembryonic%20component?size=1
Make the font for the Advanced Search, Contributors, Help and Submit text black not gray.
Make Featured Image and Explore Paramecium less bold (match current page)
Any php code on this site should have unit tests verifying correct operation. There also needs to be a wiki page with documentation on how to run unit testing.
/browse/cellcomponent/Lysosome%20and%20Related%20Organelles
Adjust the box with the email icon to the same size as the other boxes.
Move the email icon to the center of the box.
Add all of the Image attributes to the top of the search results so users can filter current results.
Do not forget new attributes - reconstruction, segmentation, and 2D icon
The Submit link to upload data is missing on flagella http://flagella.crbs.ucsd.edu
Remove:
Please take this brief survey to help us improve the site. !
Remove from the home page:
The Cell Image Library™ is a freely accessible, easy-to-search, public repository of reviewed and annotated images, videos, and animations of cells from a variety of organisms, showcasing cell architecture, intracellular functionalities, and both normal and abnormal processes. The purpose of this database is to advance research, education, and training, with the ultimate goal of improving human health.
There needs to be a wiki page describing a release process. This release process should denote what has changed in this version along with rules for versioning and include the source as a release.
Here is an example of what kind of documentation we need:
Update readme for this site to document versions of required software and either installation instructions or a link to wiki page with more detailed installation instructions.
The guestbook link on http://flagella.crbs.ucsd.edu/home sends you to production.
Attribution link label is too long (/images/6519)
Do not wrap the Yes / No check box options for the Grouped aspect in the Image Attributes Section on the Advanced search page. Move the Right hand column more to the right if necessary.
Broad Institute images
Clicking a plate takes you to one image in both the old and the new websites. Was that what we always had? or was there a way to visually explore (like Pivot) for each plate?
The old website lists all the chemicals on the image (plate) page - the new website does not. Should it?
To get off of flash we need to convert all FLV videos to mp4 and use html5 to display them in the browser. Before doing conversion it would be good to test a few conversions at different resolutions and display them in html5 container to see how they look
A quick search found that ffmpeg can convert:
http://www.guguncube.com/1103/ffmpeg-convert-adobe-flash-flv-files-to-mp4-files
The Laminar Boundries dataset missing under "Data Set" page on flagella
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