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andreas-wilm avatar andreas-wilm commented on September 2, 2024

Hey George, the compilation expects the compiled source directory for samtools and htslib, not the installation directory (even though that would be the correct way of doing things). I guess /apps/samtools/1.2.1 doesn't bam.h etc, but just the installed binaries, right? If you still have the samtools source directory, point LoFreq there. Or just install the binary distribution :)

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george-githinji avatar george-githinji commented on September 2, 2024

Thank you @andreas-wilm. I thought I would like to benefit from the new updates since the last binary release which was released a while back. Maybe you can compile a binary release for 2.1.3b? you could tag it as beta release. I would also be happy to test it and provide feedback.

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andreas-wilm avatar andreas-wilm commented on September 2, 2024

Coming soon...In the meantime see #28

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