Giter VIP home page Giter VIP logo

Hi there 👋

I work with biological knowledge graphs, machine learning, and artificial intelligence to identify active molecules and to deconvolute their mechanisms of action.

🧰 My Projects

  • 📮 Bioregistry: an integrative registry of biological databases, ontologies, and nomenclatures.
  • 🧬 Biological Expression Language (BEL): a domain specific language for representing molecular biology
  • 🌶️ PyBEL: the computational ecosystem for compiling, querying, and analyzing knowledge graphs encoded in BEL
  • 📛 PyOBO: making ontologies and semantics accessible
  • 🤖 PyKEEN: knowledge graph embedding models for humans

⚖️ My Core Scientific Values

  • ♻️ Reproducibility: code is part of the scientific process. It should be documented and re-usable by anyone.
  • 🔓 Openness: science is best when people can build on each others' work. Sharing data, code, and ideas has benefitted everyone, and is also the responsiblity of a scientist to pay forward.
  • 🎯 Thoroughness: quality is dependent on taking great care throughout all steps

📫 My Interblag

Besides my email and blog (on the left), I'm also in the internet in the following places:

Charles Tapley Hoyt's Projects

nonpher icon nonpher

Nonpher: software for design of hard-to-synthesize structures

nrl icon nrl

Network Representation Learning in Python with igraph

nsockg icon nsockg

"Not Scared of Chemistry" Knowledge Graph

nx2d3 icon nx2d3

Display NetworkX graphs inline in Jupyter notebooks

nxontology icon nxontology

NetworkX-based Python library for representing ontologies

oae icon oae

OAE: Ontology of Adverse Events

obi icon obi

The Ontology for Biomedical Investigations

obo-dashboard icon obo-dashboard

Summary Dashboard for Open Biological and Biomedical Ontologies

obo-foundry-graph icon obo-foundry-graph

Demonstrate combining all OBO Foundry ontologies via Bioregistry, Bioontologies, and ROBOT

obo-relations icon obo-relations

RO is an ontology of relations for use with biological ontologies

obonet icon obonet

OBO-formatted ontologies → networkx (Python 3)

ogms icon ogms

Automatically exported from code.google.com/p/ogms

ohd-ontology icon ohd-ontology

Automatically exported from code.google.com/p/ohd-ontology

ohmi icon ohmi

OHMI: The Ontology of Host-Microbiome Interactions

ohpi icon ohpi

OHPI: Ontology of Host-Pathogen Interactions

ols-client icon ols-client

🎡 Unified access to OLS instances like from the EBI and TIB

ols4 icon ols4

The upcoming next version of the Ontology Lookup Service (OLS)

onto2nx icon onto2nx

Converts OWL ontologies and OBO to NetworkX Graphs

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.