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MartinGrignard avatar MartinGrignard commented on June 13, 2024

Hi,
If that can help you, here is a subset of the commands I use in my dockerfile:

cd /opt
wget -O bidsme.tar.gz https://github.com/CyclotronResearchCentre/bidsme/archive/1.3.5r1.tar.gz
tar -xvf bidsme.tar.gz
mv bidsme-* bidsme
cd bidsme
python3 -m pip install --no-cache-dir --no-input --upgrade -r requirements.txt
echo 'python3 /opt/bidsme/bidsme/bidsme.py $*' > /usr/bin/bidsme
chmod a+x /usr/bin/bidsme

After that, you can use BIDSme with bidsme <sub-command> ... 🙂

from bidsme.

MartinGrignard avatar MartinGrignard commented on June 13, 2024

One year later, it is still not possible to install BIDSme using a simple pip install or conda install. Is there a reason preventing that?

from bidsme.

nbeliy avatar nbeliy commented on June 13, 2024

Since few 1.4.0 bidsme is installable via pip (but still using direct git path).
Main doc, including installation was moved to separate repository: https://gitlab.uliege.be/CyclotronResearchCentre/Public/bidstools/bidsme/bidsme_tutorial

from bidsme.

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