Giter VIP home page Giter VIP logo

htcondor-tools's People

Contributors

afinit avatar calizarr avatar nfahlgren avatar

Stargazers

 avatar  avatar  avatar

Watchers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Forkers

sumeetmankar171

htcondor-tools's Issues

Create a flexible HTCondor job/DAG workflow templating system

Here's my current thinking on how to do this (feel free to suggest alternative solutions):

Instead of editing job files, users would put all their job/DAG workflow settings into a single JSON file, something like this for a single job:

{
    "jobs" : [
        {
            "name" : "job0",
            "universe" : "vanilla",
            "getenv" : "true",
            "accounting_group" : "$ENV(CONDOR_GROUP)",
            "notification" : "complete",
            "request_cpus" : "8",
            "request_memory" : "2G",
            "executable" : "bowtie2",
            "arguments" : "-foo -bar",
            "log" : "$(Cluster).$(Process).bowtie2.log",
            "output" : "$(Cluster).$(Process).bowtie2.out",
            "error" : "$(Cluster).$(Process).bowtie2.error"
        }
    ]
}

and maybe like this for a DAG workflow

{
    "dag" : [
        {
            "name" : "job0",
            "universe" : "vanilla",
            "getenv" : "true",
            "accounting_group" : "$ENV(CONDOR_GROUP)",
            "notification" : "complete",
            "request_cpus" : "8",
            "request_memory" : "2G",
            "executable" : "bowtie2",
            "arguments" : "-foo -bar",
            "log" : "$(Cluster).$(Process).bowtie2.log",
            "output" : "$(Cluster).$(Process).bowtie2.out",
            "error" : "$(Cluster).$(Process).bowtie2.error",
            "child" : "job1"
        },
        {
             "name" : "job1",
             "..." : "..."
        }
    ]
}

Then have a Python script read the JSON and create the necessary job and DAG files. @calizarr also added the idea of using jinja as a templating tool to insert the values from the JSON into job/DAG template files.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.