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View Code? Open in Web Editor NEWA collection of scripts for building and running HTCondor jobs and workflows
License: MIT License
A collection of scripts for building and running HTCondor jobs and workflows
License: MIT License
Here's my current thinking on how to do this (feel free to suggest alternative solutions):
Instead of editing job files, users would put all their job/DAG workflow settings into a single JSON file, something like this for a single job:
{
"jobs" : [
{
"name" : "job0",
"universe" : "vanilla",
"getenv" : "true",
"accounting_group" : "$ENV(CONDOR_GROUP)",
"notification" : "complete",
"request_cpus" : "8",
"request_memory" : "2G",
"executable" : "bowtie2",
"arguments" : "-foo -bar",
"log" : "$(Cluster).$(Process).bowtie2.log",
"output" : "$(Cluster).$(Process).bowtie2.out",
"error" : "$(Cluster).$(Process).bowtie2.error"
}
]
}
and maybe like this for a DAG workflow
{
"dag" : [
{
"name" : "job0",
"universe" : "vanilla",
"getenv" : "true",
"accounting_group" : "$ENV(CONDOR_GROUP)",
"notification" : "complete",
"request_cpus" : "8",
"request_memory" : "2G",
"executable" : "bowtie2",
"arguments" : "-foo -bar",
"log" : "$(Cluster).$(Process).bowtie2.log",
"output" : "$(Cluster).$(Process).bowtie2.out",
"error" : "$(Cluster).$(Process).bowtie2.error",
"child" : "job1"
},
{
"name" : "job1",
"..." : "..."
}
]
}
Then have a Python script read the JSON and create the necessary job and DAG files. @calizarr also added the idea of using jinja as a templating tool to insert the values from the JSON into job/DAG template files.
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