data2health / architecting_attribution Goto Github PK
View Code? Open in Web Editor NEWThis project aims to provide a mechanism to track and provide attribution.
License: Other
This project aims to provide a mechanism to track and provide attribution.
License: Other
We need to illustrate: contributions to different types of research products, and their representation in the file. The use cases could also include what viewing that information might look like (for example, in a software repo there could be a file analogous to the license.md file).
I believe Dave is working on an app?
Extend CRO using existing community contributions we’ve gathered in workshops on the types of activities for which people wish to receive credit
From the Phase 2 doc
As a user I would like the CRO to be available in OWL and OBO formats.
We should take a hint from ORD camp and make some cool badges :)
rename ROO to research artefact ontology (RAO)
Send draft to Chunlei, Dave, Melissa
Use COAR NGR as a guide to construct the following support materials:
A few comments to potentially make this project repo description more useful to naive readers and to NCATS:
Under the deliverables, I made some suggested descriptors for some, but others i didn't really know what they meant:
Minor- I find the long list of potentially relevant repositories distracting from the actual project. One way to address this would be to create requirements/documentation in the Github Wiki and organize the information there. Similarly, it would be good to start developing some of the implementation requirements and best practices there.
Write blog post
Create pointers to where CRO can be found (and in which formats)
specifically resource types, in the context of artifacts.
https://www.coar-repositories.org/activities/repository-interoperability/coar-vocabularies/
Write a quick sentence explaining what we'd like to do w/WD and COAR and why it's good.
Definition: A role related to creations of the mind, such as inventions; literary and artistic works; designs; and symbols, names and images used in commerce.
From https://www.wipo.int/about-ip/en/
This is from the Phase 2 doc. Not entirely sure what the action item is here
We list a lot of repos under the Repositories header in the ReadMe file.
It would be nice to include the description alongside the name.
I can work on this, or if anyone would like to help/do it, please assign yourself. :)
https://dictionary.casrai.org/Category:Objects
we can use this for a base and map other stuff here (other research object type concepts from other vocabs like publications from MeSH)
Related to issue #38
https://docs.google.com/spreadsheets/d/1Mw8gK2NUGM8po7GGRtJTShRM2QNFoR19VJrjQuVCDW8/edit#gid=323661248)
Nicole needs this in order to move on.
If anyone in the community would like to comment on these, please do!
Overlaps with educational instruction role.
https://docs.google.com/spreadsheets/d/1QqKUtSQ701gq1bwEY2EF-8FrYnZUlCRvW3V0PY02euM/edit#gid=0
Some of the imported terms are missing definitions, so we need to decide if we want to write definitions in the ROO file, or submit tickets to the source ontologies, or both?
(I am leaning towards both)
@marijane, if it is not easy to do this automatically, I can do it manually.
Is OpenRIF a related repo? https://github.com/openrif
and add some citations to relevant papers and posters
Create a shared doc
Use research objects from Wikidata for the annotation files
KH to send to Chunlei for his okay before sending
from the report:
The NISO Scholarly Outputs table (see Google document at https://sites.google.com/a/niso.org/scholarlyoutputs/) is a first attempt at a comprehensive list of research outputs, including the traditional academic publication and extending to more alternative outputs. These outputs may fall within the scope of assessment when developing metrics to evaluate the impact of scholarly activity, with the acknowledgement that meaningful impact can go far beyond conventional publishing workflows and often involves the rich array of scholarly products that are created during the research process. These output types are grouped by class and alphabetized with a brief description and documentation of known current efforts (and by whom they are being undertaken). Relevant links are listed where available, and most entries have been assigned a focus area to group them by similar contextual uses. The focus areas are: Basic Sciences; Capacity; Code and Software; Communications; Data; Education and Training Materials; Events; Grey Literature; Images, Diagrams, and Video; Industry; Instruments, Devices, and Inventions; Methodologies, Publications; Regulatory, Compliance, and Legislation; Standards; and Other.
This work is not complete, as the very nature of scholarly activity continually evolves. However, the rich array of outputs represented in this table help to better establish the breadth and depth of scholarly work that may be produced by an investigator or by a research team. Through this effort, the working group hopes to generate discussion about how we may begin to leverage integrated data, persistent identifiers, and automated workflows to better capture and track the full complement of research activity, as is possible for publication data.
As a user I would like this CRO to be available in Bioportal and Ontobee
See file here
Some of the suggestions include MeSH publication types, wikidata, etc.
MJ looking for what's available in RDF. :-)
Overall Qs to resolve:
What else can we be doing with this project? Where would you like to see us focus? What do you want to help create? Please share here!
Lisa to source, provide options to KH for selection.
It needs to end in .owl. Prerequisite for #9.
Draft annotation file structure is here:
https://docs.google.com/spreadsheets/d/1sqDi2RtErDUqP1ovyV45Cz07vYvxnpyOjwBVJt2k3a8/edit#gid=0
goal is to have modules for different domains
to do: @marijane to ping Chris M about creating a modular ontology with the ODK
import the whole CREDIT ontology as an owl:imports (on the ontology metadata page in Protege)
this spreadsheet contains all of the terms that were brainstormed at the Force2015 workshop:
https://docs.google.com/spreadsheets/d/1BudaIWSIgo7RVmzIpWO_hkE5mlgeii16xBTY37d0Zek/edit#gid=0
At the F2F, we decided that we didn't want to add all of these terms to the CRO at this time. I think a lot of terms are overlapping though, is it worth comparing this file to to the terms that are currently in the CRO, to see if there are some new terms we may want to potentially add?
Develop wizard to generate enhanced attribution content. Input could be a persistent identifier (or set of PIDs), output is properly formatted citation with enhanced content or block of text.
To determine: deliverables, staffing, schedule, stakeholders, CTSA context, communication plan
work on a plan of sorts for the RAO. Enumerate use cases, carefully document all the sources for terms we’ve considered, and evaluate ontologies for reuse. We'll break this out into user stories then.
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