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gatewayprimerdesigner's Introduction

gatewayPrimerDesigner

Simple tool to attempt automation of gateway cloning primer design

##Required modules

The following perl modules are required by this script:

Bio::Perl
Bio::SeqIO
Bio::DB::GenBank

These can be installed via cpan - see http://www.cpan.org/modules/INSTALL.html

In addition, perl version 5.10.0 or higher is required (run perl -v to see what version you have installed).

##Install and Run

Get the script:

git clone https://github.com/gantzgraf/gatewayPrimerDesigner.git

Enter the newly downloaded directory:

cd gatewayPrimerDesigner

Run the script to get usage information:

perl gateway_designer.pl -h 

##Credit

Copyright © 2015 David A. Parry

Code for calculating primer TMs is lifted from perlprimer.pl (Copyright © 2003-2011, Owen Marshall)

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

gatewayprimerdesigner's People

Contributors

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