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yap_taz_cluster_data's Introduction

YAP_TAZ_cluster_data

data generator for splitting dataset for CPA to extract the image tiles

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yap_taz_cluster_data's Issues

Python / IPython script, which reads images into numpy

Cropped cells, depending from the whole image they are sampled from, have different intensities. We need to normalize the cropped cells image-wise.

Todo:

  • Image-wise, channel-wise normalization for each cropped cell (image number is the first number of the file name)
  • Reading images into 60 x 60 x 3 numpy matrices ( if we use a convnet encoder and deconv decoder, or should we use a fully connected vanilla VAE? )

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