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Name: Davide Cittaro
Type: User
Bio: Bioinformartist
Location: Milan
Name: Davide Cittaro
Type: User
Bio: Bioinformartist
Location: Milan
Annotated data matrix.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Batch balanced KNN
CellRank for directed single-cell fate mapping
Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
A general DSP tool for processing genomic data
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Near-optimal RNA-Seq quantification
Multi-Omics Factor Analysis
Multi-omics factor analysis v2
Single-Cell Analysis in Python. Scales to >1M cells.
Things needed for custom scATAC analysis
An interface for Nested Stochastic Block Model for single cell analysis
A conda-smithy repository for schist.
Some example notebooks for scNSBM package
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
scikit-fusion: Data fusion via collective latent factor models
Some random code about single cell stuff to share with my Tweeps
Tools for single-cell data processing
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Module to detect mesoscale structures (community, core-periphery, bipartite) on Graphs and Multigraphs using surprise.
TensorLy: Tensor Learning in Python.
Tools for handling Unique Molecular Identifiers in NGS data sets
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.