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hgap-3.0

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hisat

Fast spliced aligner with low memory requirements

hmmratac

HMMRATAC peak caller for ATAC-seq data

hosts

:statue_of_liberty:最新可用的google hosts文件。镜像：

hosts-1

镜像：https://coding.net/u/scaffrey/p/hosts/git

hpc

HPC

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htslib

C library for high-throughput sequencing data formats

idba

imonitor

This script use to analyze the immune repertoire sequenced by high throughtput sequencing

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

infernal

RNA secondary structure/sequence profiles for homology search and alignment

install_aspera_connect

Install latest version of Aspera Connect and show example how to use it for downloading sequening data.

installation

scripts for installation of common bioinformatics programs

intel-gatk3-4-germline-snps-indels

Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure

interproscan

introtor

Materials for 2018 rstudio::conf shortcourse, Introduction to R & RStudio

introtor-1

introtor_workshop

ip2region

Ip2region is a offline IP location library with accuracy rate of 99.9% and 0.0x millseconds searching performance. DB file is less then 5Mb with all ip address stored. binding for Java,PHP,C,Python,Nodejs,Golang,C#,lua. Binary,B-tree,Memory searching algorithm

irys-scaffolding

scripts to parse IrysView output

isoseq-3.0

User Documentation

javaguide

【Java学习+面试指南】 一份涵盖大部分Java程序员所需要掌握的核心知识。

jellyfish

A fast multi-threaded k-mer counter

jmodeltest2

Automatically exported from code.google.com/p/jmodeltest2

juicebox

Visualization and analysis software for Hi-C data -

juicebox.js

HiC contact matrix visualization

juicer-docker

Docker for Juicer