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ordereda

Exploratory data analysis for incomplete orderings.

pedigreesim

PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.

phwelike

Code from <https://github.com/LiboJiang/DoubleReduction> in package form.

plainwhite-jekyll

A configurable portfolio-style jekyll theme for writers.

poisson

a repo for investigating modelling poisson data by normal, or mixture of normal

presidential-precinct-map-2020

The GeoJSON dataset behind our nationwide precinct map of the 2020 presidential general election

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

r-codespaces

GitHub Codespaces configuration for R and Shiny.

r4ds

R for data science: a book

reproduce_fasims

Reproduce the results from Gerard (2019).

reproduce_genotyping

Reproduce the results from Gerard et al. (2018)

reproduce_prior_sims

Reproduce the results of Gerard and Ferrão (2019)

reproduce_sure

Reproduce the results of Gerard and Hoff (2017)

rmbayes_sims

Scripts to reproduce the results of Gerard (2023).

rna_seq_slides

Slides for DDD Site Visit

ruth

Robust Unified Hardy-Weinberg Equilibrium Test

ruvb_plus_ash

ruvb_revisions

Code to prepare revisions for the RUVB paper.

ruvb_sims

Reproducing the results from Gerard and Stephens (2021)

sabotash

A package that sabotages ASH.

scmouthwash

Explore MOUTHWASH in Single Cell Data

seqgendiff

Sequence Generation for Differential Expression Analysis and Beyond

sim_code

Repository for general simulation code.

simple_mouthwash_sims

Simple implementation of mouthwash_sims

stat234

Course lectures, code, and examples for stat 234

stat614

Teaching materials for Statistics 614 (Statistical Methods) at American University in Fall 2018.

stat_412_612

Teaching website for STAT 412/612 taught in Spring 2019 at American University.

stat_415_615

Course website for STAT 415/615 Regression

stat_415_615_rmds

R markdown files for STAT 415/615 Regression

stfs

Code and supplemental material for Statistical Thinking from Scratch