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anndatas.jl

Julia compatibility for the anndata python module

automa.jl

A julia code generator for regular expressions

baysor

Bayesian Segmentation of Spatial Transcriptomics Data

bgzfstreams.jl

BGZF Stream

bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

bioalignments.jl

Sequence alignment tools

bioconda-recipes

Conda recipes for the bioconda channel.

biocore.jl

Core types and interfaces for BioJulia packages

biofmtspecimens

A collection of bioinformatics file format specimens to test against

biosequences.jl

Biological sequences for the julia language

biosymbols.jl

Nucleic and amino acid primitive types and alphabets

cbgb

computational biology grab-bag: messy one-off scripts for a variety of tasks

coitrees

A very fast interval tree data structure

color.jl

Pretty colors for Julia

colormake

colorize GNU make output

contour.jl

Calculating contour curves for 2D scalar fields in Julia

coverage.jl

Take Julia code coverage and memory allocation results, do useful things with them

craigcitro-dotfiles

cronenberg.jl

Simulating spatial expression data

dataarrays.jl

Data structures that allow missing values

dataframes.jl

library for working with tabular data in Julia

datetime.jl

A Date and DateTime implementation for Julia

decisiontree.jl

Julia implementation of Decision Tree (CART) and Random Forest algorithms

doozer

Go client driver for doozerd, a consistent, distributed data store

doozerd

A consistent distributed data store.

dotfiles

ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

escher.jl

Web UIs in pure Julia

fastlog

A faster, reduced-precision logarithm function.