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peakolator

World's fastest genomic segmentation algorithm.

peakolator-legacy

Some old code.

pique

De novo assembly of sequencing reads with probabilistic data structures.

pix2pix

Image-to-image translation with conditional adversarial nets

polee

Analyzing RNA-Seq with approximate likelihood

poleeclassifier.jl

pyrex.vim

Updated Pyrex.vim with Cython support

quark

semi-reference-based short read compression

quip

Compressing next-generation sequencing data with extreme prejudice.

quip-paper

A paper describing and evaluating the quip compression algorithm.

quip-website

A very simple website for quip.

ragel-julia

A Julia backend for Ragel

reactive.jl

Reactive programming primitives for Julia

recursivesparseblocks.jl

julia interface to the librsb sparse matrix library

rlsim

A package for simulating RNA-seq library preparation with parameter estimation

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

seine-rs

A (rust)🦀 library and suite of tools for manipulating and processing the output of salmon, alevin, and alevin-fry 🐟

seqbias

An R package to correct for sequence bias in RNA-Seq experiments.

seqbias-paper

text and code for 2012 seqbias paper

seqsim

A simplistic RNA-Seq simulator.

sexer_machine

Classify sex given a collection of RNA-Seq samples

sha.jl

A performant, 100% native-julia SHA1, SHA2, and SHA3 implementation

showoff.jl

Nicely format an array of n things for tables and plots

skia.jl

Experimental skia bindings

sls

Stochastic L-Systems in Python

snap.svg

The JavaScript library for modern SVG graphics.

specifications

GFF and GVF specification documents

squidpy

Spatial Single Cell Analysis in Python

subsample

Randomly sample lines from massive text files efficiently

switch.jl

A C-style switch statement for Julia