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grokking_algorithms

Code for the book Grokking Algorithms (https://amzn.to/29rVyHf)

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

homework-0

hugo-academic

The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:

inflammation

intro_programming

A set of IPython notebooks and learning resources for an Introduction to Programming class, focusing on Python.

introduction_to_the_unix_shell_for_biologists

Introduction to the Unix Shell for biologists

ipsur

IPSUR, Introduction to Probability and Statistics Using R, is a textbook written for an undergraduate course in probability and statistics. IPSUR is FREE, in the GNU sense of the word.

ipystata

Enables the use of Stata together with Python via Jupyter (IPython) notebooks.

jupyter-pathway

Canonical pathway visualization and analysis

knowledgediscovery

Analysis code for knowledge discovery project

mastering-pycharm-course

Course demos and handouts for Talk Python's Mastering PyCharm course

myrepo

ncbi_jupyter

A variety of NCBI Computational Tools Distributed as Jupyter Notebooks

ncbicomputationalcookbook

Jupyter notebooks to more effectively leverage computational resources at NCBI.

new_repo

ngs-pipeline-ipython-notebook

Next generation sequencing pipeline python notebook

nlm_reproducibility_workshop

NLM Reproducibility Workshop, NIH Sept 24-26, 2018

open-worm-analysis-toolbox

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

opentrons

Software for writing protocols and running them on Opentrons robots

openworm

Project Home repo for Central Dockerfile and Project-wide issues

organization-rr-jupyter

Data and project organization for Reproducible Research link to old longer version.

pandas_exercises

Practice your pandas skills!

pfb2018

projects

A list of practical projects that anyone can solve in any programming language.

py-viz-blog

Code for Pythonic visualization blog post

py4lifesci

Python for the Life Sciences code repository

pylearn2

A Machine Learning library based on Theano

python-jumpstart-course-demos

Contains all the "handout" materials for my Python Jumpstart by Building 10 Apps course. This includes try it yourself and finished versions of the 10 apps.

python-programming-for-biologists