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svprops's Issues

compilation fails in Scientific Linux 6.5

I am getting the following errors when I try to compile svprops:

make[1]: Leaving directory `$HOME/svprops/src/htslib'
g++ -isystem $HOME/svprops/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -O9 -DNDEBUG src/svprops.cpp -o src/svprops -L$HOME/svprops/src/htslib/ -lz -lhts -Wl,-rpath,$HOME/svprops/src/htslib/
In file included from src/svprops.cpp:28:
$HOME/svprops/src/htslib/htslib/vcf.h: In function 'void bcf_format_gt(bcf_fmt_t*, int, kstring_t*)':
$HOME/svprops/src/htslib/htslib/vcf.h:798: error: 'INT8_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:799: error: 'INT16_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:800: error: 'INT32_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h: In function 'int bcf_enc_inttype(long int)':
$HOME/svprops/src/htslib/htslib/vcf.h:829: error: 'INT8_MAX' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:829: error: 'INT8_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:830: error: 'INT16_MAX' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:830: error: 'INT16_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h: In function 'void bcf_enc_int1(kstring_t*, int32_t)':
$HOME/svprops/src/htslib/htslib/vcf.h:836: error: 'INT32_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:838: error: 'INT8_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:841: error: 'INT8_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:842: error: 'INT8_MAX' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:842: error: 'INT8_MIN' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:845: error: 'INT16_MAX' was not declared in this scope
$HOME/svprops/src/htslib/htslib/vcf.h:845: error: 'INT16_MIN' was not declared in this scope
make: *** [src/svprops] Error 1

I have tried several versions of gcc (4.4.7, 4.5.3, 4.8.2, 5.2), but I haven't been able to successfully compile it.

Victor

Getting error when making all

Sorry how I can solve this error

make: *** [src/svprops] Error 1
(/home/fi1d18/.conda/onco) [fi1d18@cyan01 svprops]$ make all
g++ -isystem /home/fi1d18/svprops/svprops/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -fno-strict-aliasing -O3 -fno-tree-vectorize -DNDEBUG -D__STDC_LIMIT_MACROS src/svprops.cpp -o src/svprops -L/home/fi1d18/svprops/svprops/src/htslib/ -L/home/fi1d18/svprops/svprops/src/htslib//lib -lhts -lz -llzma -lbz2 -Wl,-rpath,/home/fi1d18/svprops/svprops/src/htslib/
/usr/bin/ld: cannot find -llzma
collect2: ld returned 1 exit status
make: *** [src/svprops] Error 1
(/home/fi1d18/.conda/onco) [fi1d18@cyan01 svprops]$

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