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Hi I am getting the following problem when I am using your vagrant configuration. It seems to be a problem with mysql but I cannot figure out how to overcome this.
Error: Execution of '/usr/bin/apt-get -q -y -o DPkg::Options::=--force-confold install mysql-server-5.6' returned 100: Reading package lists...
==> default: Building dependency tree...
==> default: Reading state information...
==> default: mysql-server-5.6 is already the newest version.
==> default: 0 upgraded, 0 newly installed, 0 to remove and 193 not upgraded.
==> default: 1 not fully installed or removed.
==> default: After this operation, 0 B of additional disk space will be used.
==> default: Setting up mysql-server-5.6 (5.6.27-0ubuntu0.14.04.1) ...
==> default: start: Job failed to start
==> default: invoke-rc.d: initscript mysql, action "start" failed.
==> default: dpkg: error processing package mysql-server-5.6 (--configure):
==> default: subprocess installed post-installation script returned error exit status 1
==> default: Errors were encountered while processing:
==> default: mysql-server-5.6
==> default: E: Sub-process /usr/bin/dpkg returned an error code (1)
==> default:
==> default: Error: /Stage[main]/Mysql::Server::Install/Package[mysql-server]/ensure: change from absent to present failed: Execution of '/usr/bin/apt-get -q -y -o DPkg::Options::=--force-confold install mysql-server-5.6' returned 100: Reading package lists...
==> default: Building dependency tree...
==> default: Reading state information...
==> default: mysql-server-5.6 is already the newest version.
==> default: 0 upgraded, 0 newly installed, 0 to remove and 193 not upgraded.
==> default: 1 not fully installed or removed.
==> default: After this operation, 0 B of additional disk space will be used.
==> default: Setting up mysql-server-5.6 (5.6.27-0ubuntu0.14.04.1) ...
==> default: start: Job failed to start
==> default: invoke-rc.d: initscript mysql, action "start" failed.
==> default: dpkg: error processing package mysql-server-5.6 (--configure):
==> default: subprocess installed post-installation script returned error exit status 1
==> default: Errors were encountered while processing:
==> default: mysql-server-5.6
==> default: E: Sub-process /usr/bin/dpkg returned an error code (1)
==> default:
==> default: Notice: /Stage[main]/Mysql::Server::Install/Exec[mysql_install_db]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server::Install/Exec[mysql_install_db]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Mysql::Server::Config/File[mysql-config-file]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server::Config/File[mysql-config-file]: Skipping because of failed dependencies
==> default: Error: Execution of '/usr/bin/apt-get -q -y -o DPkg::Options::=--force-confold install php5-mysqlnd' returned 100: Reading package lists...
==> default: Building dependency tree...
==> default: Reading state information...
==> default: The following packages will be REMOVED:
==> default: php5-mysql
==> default: The following NEW packages will be installed:
==> default: php5-mysqlnd
==> default: 0 upgraded, 1 newly installed, 1 to remove and 193 not upgraded.
==> default: 1 not fully installed or removed.
==> default: Need to get 0 B/138 kB of archives.
==> default: After this operation, 264 kB of additional disk space will be used.
==> default: (Reading database ... 67341 files and directories currently installed.)
==> default: Removing php5-mysql (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5_invoke prerm: Disable module mysql for fpm SAPI
==> default: php5_invoke prerm: Disable module mysql for cli SAPI
==> default: php5_invoke prerm: Disable module mysqli for fpm SAPI
==> default: php5_invoke prerm: Disable module mysqli for cli SAPI
==> default: php5_invoke prerm: Disable module pdo_mysql for fpm SAPI
==> default: php5_invoke prerm: Disable module pdo_mysql for cli SAPI
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 7886
==> default: Selecting previously unselected package php5-mysqlnd.
==> default: (Reading database ... 67330 files and directories currently installed.)
==> default: Preparing to unpack .../php5-mysqlnd_5.6.14+dfsg-1+deb.sury.orgtrusty+1_amd64.deb ...
==> default: Unpacking php5-mysqlnd (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 7985
==> default: Setting up mysql-server-5.6 (5.6.27-0ubuntu0.14.04.1) ...
==> default: start: Job failed to start
==> default: invoke-rc.d: initscript mysql, action "start" failed.
==> default: dpkg: error processing package mysql-server-5.6 (--configure):
==> default: subprocess installed post-installation script returned error exit status 1
==> default: Setting up php5-mysqlnd (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5_invoke: Enable module mysqlnd for fpm SAPI
==> default: php5_invoke: Enable module mysqlnd for cli SAPI
==> default: php5_invoke: Enable module mysql for fpm SAPI
==> default: php5_invoke: Enable module mysql for cli SAPI
==> default: php5_invoke: Enable module mysqli for fpm SAPI
==> default: php5_invoke: Enable module mysqli for cli SAPI
==> default: php5_invoke: Enable module pdo_mysql for fpm SAPI
==> default: php5_invoke: Enable module pdo_mysql for cli SAPI
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 9055
==> default: Errors were encountered while processing:
==> default: mysql-server-5.6
==> default: E: Sub-process /usr/bin/dpkg returned an error code (1)
==> default:
==> default: Error: /Stage[main]/Puphpet_mysql/Puphpet::Php::Module[mysqlnd]/Php::Module[mysqlnd]/Package[PhpModule_mysqlnd]/ensure: change from absent to present failed: Execution of '/usr/bin/apt-get -q -y -o DPkg::Options::=--force-confold install php5-mysqlnd' returned 100: Reading package lists...
==> default: Building dependency tree...
==> default: Reading state information...
==> default: The following packages will be REMOVED:
==> default: php5-mysql
==> default: The following NEW packages will be installed:
==> default: php5-mysqlnd
==> default: 0 upgraded, 1 newly installed, 1 to remove and 193 not upgraded.
==> default: 1 not fully installed or removed.
==> default: Need to get 0 B/138 kB of archives.
==> default: After this operation, 264 kB of additional disk space will be used.
==> default: (Reading database ... 67341 files and directories currently installed.)
==> default: Removing php5-mysql (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5_invoke prerm: Disable module mysql for fpm SAPI
==> default: php5_invoke prerm: Disable module mysql for cli SAPI
==> default: php5_invoke prerm: Disable module mysqli for fpm SAPI
==> default: php5_invoke prerm: Disable module mysqli for cli SAPI
==> default: php5_invoke prerm: Disable module pdo_mysql for fpm SAPI
==> default: php5_invoke prerm: Disable module pdo_mysql for cli SAPI
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 7886
==> default: Selecting previously unselected package php5-mysqlnd.
==> default: (Reading database ... 67330 files and directories currently installed.)
==> default: Preparing to unpack .../php5-mysqlnd_5.6.14+dfsg-1+deb.sury.orgtrusty+1_amd64.deb ...
==> default: Unpacking php5-mysqlnd (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 7985
==> default: Setting up mysql-server-5.6 (5.6.27-0ubuntu0.14.04.1) ...
==> default: start: Job failed to start
==> default: invoke-rc.d: initscript mysql, action "start" failed.
==> default: dpkg: error processing package mysql-server-5.6 (--configure):
==> default: subprocess installed post-installation script returned error exit status 1
==> default: Setting up php5-mysqlnd (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5_invoke: Enable module mysqlnd for fpm SAPI
==> default: php5_invoke: Enable module mysqlnd for cli SAPI
==> default: php5_invoke: Enable module mysql for fpm SAPI
==> default: php5_invoke: Enable module mysql for cli SAPI
==> default: php5_invoke: Enable module mysqli for fpm SAPI
==> default: php5_invoke: Enable module mysqli for cli SAPI
==> default: php5_invoke: Enable module pdo_mysql for fpm SAPI
==> default: php5_invoke: Enable module pdo_mysql for cli SAPI
==> default: Processing triggers for php5-fpm (5.6.14+dfsg-1+deb.sury.orgtrusty+1) ...
==> default: php5-fpm stop/waiting
==> default: php5-fpm start/running, process 9055
==> default: Errors were encountered while processing:
==> default: mysql-server-5.6
==> default: E: Sub-process /usr/bin/dpkg returned an error code (1)
==> default:
==> default: Notice: /Stage[main]/Mysql::Server::Config/File[/etc/mysql/conf.d]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server::Config/File[/etc/mysql/conf.d]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Mysql::Server::Service/Service[mysqld]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server::Service/Service[mysqld]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Mysql::Server::Service/File[/var/log/mysql/error.log]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server::Service/File[/var/log/mysql/error.log]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Mysql::Server::Root_password/Mysql_user[root@localhost]: Dependency Package[mysql-server] has failures: true
==> default: Notice: /Stage[main]/Mysql::Server::Root_password/File[/root/.my.cnf]: Dependency Package[mysql-server] has failures: true
==> default: Error: Could not prefetch mysql_user provider 'mysql': Execution of '/usr/bin/mysql -NBe SELECT CONCAT(User, '@',Host) AS User FROM mysql.user' returned 1: ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2)
==> default:
==> default: Warning: /Stage[main]/Mysql::Server::Root_password/Mysql_user[root@localhost]: Skipping because of failed dependencies
==> default: Warning: /Stage[main]/Mysql::Server::Root_password/File[/root/.my.cnf]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Mysql::Server/Anchor[mysql::server::end]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Mysql::Server/Anchor[mysql::server::end]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Puphpet_mysql/Mysql_user[dotplant2test@localhost]: Dependency Package[mysql-server] has failures: true
==> default: Warning: /Stage[main]/Puphpet_mysql/Mysql_user[dotplant2test@localhost]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Puphpet_mysql/Mysql_database[dotplant2]: Dependency Package[mysql-server] has failures: true
==> default: Error: Could not prefetch mysql_database provider 'mysql': Execution of '/usr/bin/mysql -NBe show databases' returned 1: ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2)
==> default:
==> default: Warning: /Stage[main]/Puphpet_mysql/Mysql_database[dotplant2]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Swap_file/Exec[Attach swap file]/returns: executed successfully
==> default: Notice: /Stage[main]/Puphpet_server/Exec[dotfiles]/returns: executed successfully
==> default: Notice: /Stage[main]/Pyenv/Vcsrepo[/usr/local/pyenv]/revision: revision changed '3cde540ca00208fbfd0a5e7708c3053bc8cca9f5' to 'v0.4.0-20140404'
==> default: Notice: /Stage[main]/Composer/Exec[download_composer]/returns: executed successfully
==> default: Notice: /Stage[main]/Puphpet_php/Puphpet::Php::Pecl[pecl_http]/Php::Pecl::Module[pecl_http]/Exec[pecl-pecl_http]/returns: executed successfully
==> default: Info: Puphpet::Php::Pecl[pecl_http]: Scheduling refresh of Service[php5-fpm]
==> default: Notice: /Stage[main]/Puphpet_php/Service[php5-fpm]: Dependency Package[PhpModule_mysqlnd] has failures: true
==> default: Warning: /Stage[main]/Puphpet_php/Service[php5-fpm]: Skipping because of failed dependencies
==> default: Notice: /Stage[main]/Puphpet_php/Service[php5-fpm]: Triggered 'refresh' from 1 events
==> default: Notice: Finished catalog run in 101.43 seconds

I've got an error during vagrant up process : Warning: Authentication failure.. Something wrong with auth keys I think. I'm not very familiar with vagrant and especially with puppet, so can't fix this by myself.

After insert vagrant up command, receive this message:

default: Removing insecure key from the guest if it's present...
default: Key inserted! Disconnecting and reconnecting using new SSH key...
default: Warning: Authentication failure. Retrying...
default: Warning: Authentication failure. Retrying...
default: Warning: Authentication failure. Retrying...
default: Warning: Authentication failure. Retrying...
default: Warning: Authentication failure. Retrying...
...
Timed out while waiting for the machine to boot. This means that
Vagrant was unable to communicate with the guest machine within
the configured ("config.vm.boot_timeout" value) time period.

hello @bethrezen.

I've found wrong absolute path on your config.yaml line 71.
command: 'cd /var/www/dotplant2/applicaiton/ && ./yii background/tasks'

I think it must be:
command: 'cd /var/www/dotplant2/application/ && ./yii background/tasks'