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trs-omix's Introduction

TRS-omix: search engine

This code accompanies the paper: Sebastian Sakowski, Marta Majchrzak, Jacek Waldmajer, Pawel Parniewski: TRS-omix: a new search engine for trinucleotide flanked sequences. 2021.

The content of the repository comes from it's predecessor, i.e.: https://github.com/TRS-omix/software

ToDo's:

"Proste tematy" 0. Korekta sekwencji flankującej CGACGACGACG + analogicznie po prawej strony

  1. Przy uruchomieniu programu plik wsadowy z listą genomów, nazwy plików genomowych dowolne

  2. W kolumnie O ("FRG NO") - wpis generowany ręcznie, do automatyzacji. ciąg znaków z nagłowka pliku fasta (>..." ") prefix-indeks

  3. Podobieństwo sekwencji w ramach iteriors.txt ("wnętrza")

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