digenoma lab's Projects
Whole Exome/Whole Genome Sequencing alignment pipeline
Nextflow pipeline for short-read alignment
Nextflow pipeline to discover ecDNA on cancer genomes
Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
A repository to convert BAM->CRAM files
Repository that holds data, scripts and figures regarding to Biomining MAGs-SMAG Profiling Article
A nextflow pipeline to call SNV from short-read sequences
Not my work, just a repo for DiscovarDenovo version 51885
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
FAST-SG idea implemented using minimizer and chaining with the minimap2 API.
Germline structural variant calling pipeline for short read WGS datasets
Hybrid Binning Wengan (HBW)
Nextflow pipeline for scaffolding genome assemblies with Hi-C reads
Ultra-fast detection and split of miss-assembled contigs using pair-end reads.
A nextflow pipeline to count k-mers and estimate genome size from WGS data
Synthetic Scaffolding Graph construction, Overlaps, Scaffolding, Validation, Gap filling and Polishing
Assembly and binning of metagenomes
Mutect pipeline with Nextflow
Mutational signature analysis of WGS data
A DSL for data-driven computational pipelines
A Nextflow pipeline for the annotation of bacterial genomes or MAGs running Bakta
A nextflow pipeline to call somatic gene fusions
A Nextflow pipeline for running Groot: a tool to type Antibiotic Resistance Genes (ARGs) in metagenomic samples.
Pipeline to make neonantigen prediction from WGS data
A nextflow pipeline to calculate depth of coverage from a metagenomic set of bins
Nextflow workflow running NGScheckmate