digyt / neuropynamics Goto Github PK

• Adding of reset button for neuron parameters

• Explanation of parameters in code

• Neuron implementation

• Wrapper function

• Integration with demo notebook

If you push a Colab notebook to GitHub the path for the "Open in Colab" link is created with the notebook in the base path of the branch it was pushed to.

So in the end we need to make sure that each "Open in Colab" button actually is set to the correct path and works.

to easily visualize data

these could then be used in for examples in: #6

• Neuron model explanation

• Short intro to brian2 (units, monitors etc.)

• Neuron parameter explanations

• Interaction with the notebook

This should contain the following:

• Overview of repository content and goal

• Links to all notebooks

• Licensing information

• References

Add and improve the existing examples for dendritic computation.

to show how to handle synapses etc. with brian2

A simple library of differential equation based on different neuron models, as used in brian2 is provided here:

https://brian2.readthedocs.io/en/stable/introduction/brian1_to_2/library.html?highlight=izhikevich#neuron-models

Add an example for plotting bifurcation plots, based on the brian2 introduction

• Custom fixed axis sizes

• Second y-axis for neuron input

• Plotting of input to neuron on 2nd axis

• Legend for input and neuron behavior

• Spikes as dots / vertical lines

• Add current of neuron (w/u) to plot