dorianps / docker Goto Github PK

Hi there,
I have been having issues installing and operating Lesymap through R so I am currently trying to operate Lesymap through docker. However, I am using my Mac so I was wondering whether you had any instructions regarding its installation on a Mac device ?

Simple change --- just switch xdg-open to open .... a "nice to have" request for OS X users.

You might just use a variable:

myopen=xdg-open
if [[ `uname` == "Darwin" ]] ; then 
  myopen=open
fi

Thanks for this - works well - and happy 2020!

Hi Dorian,

Thank you for implementing this docker! It is very useful.

I just wanted to ask you for a quick advice.
We've been trying to install an itksnap executable to another docker (already existing MIRTK-based pipeline and it will include itksnap) - but while it works on ubuntu - there are issues on Windows.

We get this error (after trying to load a .nii file) for qt5 itksnap:
The X11 connection broke: I/O error (code 1)
XIO: fatal IO error 22 (Invalid argument) on X server "host.docker.internal:0.0"

It runs without errors with qt4 - but the display is wrong.

This is how we run the docker image:
docker run --env DISPLAY="host.docker.internal:0.0" --rm -it -v C:\Users\Tomo\Desktop\docker-tests:/home/mydata --ipc="host" --privileged fetalsvrtk/svrtk:dcm_dev_v2

Do you know what might be causing this error?

Thank you.

Best wishes,
Alena

Hi, I am trying to use the Ubuntu docker container and its failing with the following message

➜ docker run --rm -it -v /Users/lalithvaka/Installs/temp:/home/itksnap/mydata dorianps/itksnap:latest
zsh: correct '/Users/lalithvaka/Installs/temp:/home/itksnap/mydata' to '/Users/lalithvaka/Installs/temp/home/itksnap/mydata' [nyae]? n
ITK-SNAP: cannot connect to X server
(base)

Appreciate any help on how to resolve it.

Also, am trying to use this as part of our Machine Learning platform through Kubeflow which opens Jupiter hub through a browser and if ITK-SNAP would work in there?

Thanks

Hi,

I'm trying to run the container on Windows 10 Pro. I have no problem with running the container and log in to RStudio when choosing not to mount a Windows folder in the container. But if I choose to mount a local folder, I will be redirected to http://localhost:8787/ and not able to login to RStudio.

Any ideas?

Thanks,
Siyun

Dear developers,

when running Build.linda.windows.bat I encounter this error, and the building crashes. What would you suggest to do?

Many thanks,
Ramtin