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nesoni

High throughput sequencing analysis tools

nullarbor

:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology

parallel-coordinates

A parallel coordinates plot in canvas. This is a d3 chart that is unstable and in development.

perl-obfuscated-1997

prokka-web

Web based job queue

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rocker-ultra

Containerised RStudio with bells+whistles for HPC and everywhere

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

sabre

sequence-alignment-checkpointing

Sequence alignment algorithms including check-pointing

seurat

R toolkit for single cell genomics

star

RNA-seq aligner

text-press

Text templating language for Haskell that is similar to Django/Jinja

timeywimey

A task scheduler and idle-detector for JavaScript

utils

Utilities I find useful

vennt

Dynamic Venn diagrams for differential gene expression

vue-slimgrid

A Vue wrapper component for SlickGrid

websockets

A Haskell library for creating WebSocket-capable servers

xmpp

Haskell XMPP library