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Name: Eric T. Dawson
Type: User
Company: @nvidia
Bio: Senior Scientist in Genomics, HPC and AI @nvidia
Twitter: erictdawson
Location: New York City
Blog: www.erictdawson.com
Name: Eric T. Dawson
Type: User
Company: @nvidia
Bio: Senior Scientist in Genomics, HPC and AI @nvidia
Twitter: erictdawson
Location: New York City
Blog: www.erictdawson.com
Extract kmers, skipmers, minimizers.
A threadsafe + buffered fastq/fasta reading wrapper, based on kseq.h from Heng Li
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
A small python utility which can execute a list of commands in parallel
An extensible C++ library of Hierarchical Bayesian clustering algorithms, such as Bayesian Gaussian mixture models, variational Dirichlet processes, Gaussian latent Dirichlet allocation and more.
A small library for generating VCF headers
A thread-safe LRU cache implementation in C++
lumpy: a general probabilistic framework for structural variant discovery
Convert a maf file to a bed file to use with BEDtools.
:cancer: Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
Clone me to create your manuscript
Fast genome and metagenome distance estimation using MinHash
Proof-of-concept seq-to-graph mapper and graph generator
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Scripts and code pertaining to "Human microRNAs Exhibit Two Distributions Within and Across Cancer Samples"
Fork of bamreader (from Meerkat) which actually compiles.
A (patched, ancient) BWA version for meerkat
A version of meerkat's dre that compiles.
A modified version of the mybamtools library that actually compiles.
A compilable version of meerkat's sclust
Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
A small template-based library for binary I/O of C++ primitives and arrays.
Murmur3 hash in C
MuSiCa - Mutational Signatures in Cancer
Create mutation signatures from MAF's, and decompose them into Stratton signatures
NGS Language Bindings
DNA kmer operations for nim
Notification Triggers for Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.