on Ubuntu 16.04, R itself does not crash, but it reports a segfault.
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.1 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=de_DE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=de_DE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] magrittr_1.5 tools_3.3.1 roxygen2_5.0.1 Rcpp_0.12.6 stringi_1.1.1
[6] stringr_1.1.0 tcltk_3.3.1
> install.packages("RcppAnnoy")
Installing package into ‘/home/me/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'http://cran.wu.ac.at/src/contrib/RcppAnnoy_0.0.7.tar.gz'
Content type 'application/x-gzip' length 27566 bytes (26 KB)
==================================================
downloaded 26 KB
Loading required namespace: roxygen2
* installing *source* package ‘RcppAnnoy’ ...
** package ‘RcppAnnoy’ successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/usr/share/R/include -DNDEBUG -I../inst/include/ -I"/home/me/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c annoy.cpp -o annoy.o
g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RcppAnnoy.so annoy.o -L/usr/lib/R/lib -lR
installing to /home/me/R/x86_64-pc-linux-gnu-library/3.3/RcppAnnoy/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** caught segfault ***
address 0x20, cause 'memory not mapped'
Traceback:
1: .Call(Module__classes_info, xp)
2: Module(module, mustStart = TRUE, where = env)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(Module(module, mustStart = TRUE, where = env), error = function(e) e)
7: loadModule(module = "AnnoyAngular", what = TRUE, env = ns, loadNow = TRUE)
8: (function (ns) loadModule(module = "AnnoyAngular", what = TRUE, env = ns, loadNow = TRUE))(<environment>)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch((function (ns) loadModule(module = "AnnoyAngular", what = TRUE, env = ns, loadNow = TRUE))(<environment>), error = function(e) e)
13: eval(expr, envir, enclos)
14: eval(substitute(tryCatch(FUN(WHERE), error = function(e) e), list(FUN = f, WHERE = where)), where)
15: .doLoadActions(where, attach)
16: methods::cacheMetaData(ns, TRUE, ns)
17: loadNamespace(package, lib.loc)
18: doTryCatch(return(expr), name, parentenv, handler)
19: tryCatchOne(expr, names, parentenv, handlers[[1L]])
20: tryCatchList(expr, classes, parentenv, handlers)
21: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
22: try({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps)})
23: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
24: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
25: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))
26: doTryCatch(return(expr), name, parentenv, handler)
27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
28: tryCatchList(expr, classes, parentenv, handlers)
29: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
30: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)))
31: tools:::.test_load_package("RcppAnnoy", "/home/me/R/x86_64-pc-linux-gnu-library/3.3")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)
ERROR: loading failed
* removing ‘/home/me/R/x86_64-pc-linux-gnu-library/3.3/RcppAnnoy’
The downloaded source packages are in
‘/tmp/RtmpNAupSC/downloaded_packages’
Warning message:
In install.packages("RcppAnnoy") :
installation of package ‘RcppAnnoy’ had non-zero exit status
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