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DRRs

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Parallelized, GPU-accelerated, and differentiable digitally reconstructed radiographs in Julia.

NOTE: THIS PACKAGE IS NO LONGER MAINTAINED. For similar functionality, use DiffDRR instead (https://github.com/v715/DiffDRR).

โš ๏ธ DDRs.jl was an experimental digitally reconstructed radiograph (DRR) generator in Julia. It's aim was to be a GPU-accelerated, auto-differentiable renderer (a la RayTracer.jl) for medical images, but challenges using CUDA.jl and Zygote.jl made it difficult to reach a minimal viable prototype.

๐Ÿซ DRRs.jl inspired a PyTorch version that is fully functional and publically available at DiffDRR

๐Ÿคท๐Ÿพโ€โ™€๏ธ Lessons learned from DiffDRR may be ported back to Julia at some point, but having to write custom differentiation rules is really annoying (compared to PyTorch's autograd, which just works ๐Ÿ˜•)

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drrs.jl's Issues

Add a camera and projector plane model

Parameters that should be differentiable

  • Camera location (3D point)
  • Detector location (3D point)
  • Detector orientation (normal vector is easy, 3 angles not sure how to do?)

Add differentiation wrt DRR parameters

Want the gradients wrt to

  • Camera.center (the 3D coordinates of the camera)
  • Detector.center (the 3D coordinates of the center of the detector plane)
  • Detector.normal (the orientation of the detector plane)

Implement heuristic search optimization

We are interested in solving the following inverse problem:

Given a DRR, recover the model parameters that were used to generate it.

Our idea is to use inverse rendering to solve this with gradient descent (#11). However, the prevailing strategy in medical imaging is to perform a heuristic search to solve this problem (i.e., genetic algorithm, simulated annealing, etc.).

Implement this approach for benchmarking!

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