Gated recurrent units classify amyloidogenic proteins
A paper detailing motivations, methods & findings is available in details.pdf.
Check the main notebook, amyloidClassification.ipynb for current progress on this project.
Before running the main notebook, download these datasets into the root dir:
- GPD_proteome.faa
- GPD_proteome_orthology_assignment.txt
https://datacommons.cyverse.org/browse/iplant/home/shared/iVirus/Gut_Phage_Database