This repo contains the files for the COMBINE lab website. Commits to this repo are automatically built and made public.
Lab members can contribute to the website by following the instructions in the documentation.
Incorporating Triplet Error for Predicting PPIs using Deep Learning
Home Page: https://emad-combine-lab.github.io/intrepppid/
License: GNU Affero General Public License v3.0
This repo contains the files for the COMBINE lab website. Commits to this repo are automatically built and made public.
Lab members can contribute to the website by following the instructions in the documentation.
The test sub-command does not exist, but it is in the documentation, as seen in #1 .
I should delete these references.
Pre-trained weights have not been uploaded, making inference impossible without first training a model, which is needless. This was brought up in #1 .
I need to upload the weights used in the manuscript.
Dear @jszym
I am following up on our last discussion thread here where you suggested I could use Interpppid for Plasmodium. I installed it yesterday using the following steps:
mamba create -n interppid python=3.10
mamba activate interppid
pip install intrepppid
# when I run Intrepppid I can only see train command. There is no test command as the document says
NAME
intrepppid - The INTREPPPID CLI
SYNOPSIS
intrepppid COMMAND
DESCRIPTION
The INTREPPPID CLI
COMMANDS
COMMAND is one of the following:
train
I can't see the test sub-command as I can see in your document help section
The website https://ppi.bio/infer/proteome/submit doesn't accept any sequence as when I hit the submit button, the page reloads with the empty box asking me to input the amino acid sequence again.
Is there a way to supply a multifasta file and a .tsv file that will specify pairs of proteins for which we wish to see if there is any protein-protein interactions like D-Script does?
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.