Comments (2)
Unfortunately, not yet. We are currently working on a manuscript for these tools. In the meantime I suggest referencing the public GitHub repository.
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Update: We are planning to submit an application note for publication soon. First we would like to make a few more additions to the scripts:
- assemblies get the correct sequence version (awaiting a new API coming soon from ENA)
- add tests to check installation
- look at making pip installable (mainly it's the version 2 vs 3 python issue that's held this one up)
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Related Issues (20)
- Errors accessing fastq files through enaDataGet HOT 2
- URL sanitizing breaks Aspera downloads HOT 2
- Genome download which files to use
- Error in using enaBrowserTools to download SRR
- No redownload of truncated files
- ssl Internal Error HOT 1
- Ability to only check if files are available for download
- HTTPError after enaGroupGet HOT 2
- Error with retrieving fastq files with enaGroupGet HOT 3
- TimeoutError with whatever I want to download HOT 1
- Error when downloading raw sequencing files from a registered project. HOT 1
- enaDataGet download giving HTTP Error 400 error HOT 10
- Accession not found even though it exists HOT 3
- enaDataGet error HOT 1
- enaDataGet error with FTP transfer HOT 1
- Can't download in parallel HOT 5
- enaGroupGet Portal API URLs return no results HOT 2
- enaDataGet - HTTP error 400 HOT 1
- 425 error - EnaDataGet HOT 1
- configparser error? HOT 2
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