Giter VIP home page Giter VIP logo

mattfa's People

Contributors

denisj2210 avatar mariamasid avatar psalvy avatar reallcsb avatar

Stargazers

 avatar  avatar  avatar

Watchers

 avatar  avatar  avatar

mattfa's Issues

Question about

Hi

I have run the matTFA for 'GSmodel_Ecoli.mat'. It fails because of infeasibility. I was wondering if the codes works fine on your systems? if not, please let me know what might be the cause of this error?

Thank you

Relaxation of DGo_MECDPS : 28.391 +- 2.256 (sigma) ---> 28.391 +- 72.256
Relaxation of DGo_REPHACCOAI : 16.774 +- 4.121 (sigma) ---> 16.774 +- 2
4.121
It was not possible to obtain TFA-feasible solutions with the original DGo values calculated by GCM!
We had to relax the following DGo ranges as follows:

ans =

'varName'           'LB-before'    'UB-before'    'LB-relaxed'    'UB-relaxed'
'DGo_MECDPS'        [  26.1357]    [  30.6469]    [   12.6021]    [   44.1805]
'DGo_REPHACCOAI'    [  12.6529]    [  20.8957]    [    8.5316]    [   25.0171]

Error using relaxModelWithDGoSlacks (line 171)
Although we relaxed the DGo variables it was not possible to find a feasible solution!

Error in convToTFA (line 645)
[model, relaxedDGoVarsValues, modelwDGoSlackVars] = relaxModelWithDGoSlacks(model, minObjSolVal,
rxnNameListNoDGoRelax);

Error in tutorial_GEM (line 53)
tmp = convToTFA(prepped_m,ReactionDB,[],'DGo');

Cannot open .mat files

I cannot open any of the models in the tutorials or the thermodynamic data file. The error is the same for all
% Not a binary MAT-file. Try load -ASCII to read as text.
and when I use ascii I get this error:
%Unknown text on line number 1 of ASCII file small_ecoli.mat "version".
It seems like I am missing something. could asist me on this?

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.