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ibf

Interleaved Bloom Filter implementation

igenvar

The official repository for the iGenVar project.

jupyter_notebooks

lambda

LAMBDA – the Local Aligner for Massive Biological DatA

learning-resources

Provides online material and tutorials for modern C++, efficient data structures and algorithms.

library-template

WIP

libsais

libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.

macports-ports

The MacPorts ports tree

mash

Fast genome and metagenome distance estimation using MinHash

mason

Tools for Biological Sequence Simulation

minimizer_ibf

Contains reference data and code for computing minimizers and the IBF

minimizer_snippet

minimizer_thresholds

Minimizer threshold computation.

needle

Fast and efficient searches of NGS data

pibf

Partitioned Interleaved Bloom Filter

range-v3

Range library for C++14/17/20, basis for C++20's std::ranges

raptor

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

raptor_data_simulation

scavengerhunt

schema_salad

Semantic Annotations for Linked Avro Data

sdsl-lite

Succinct Data Structure Library 3.0 (unstable, prerelease)

seqan

SeqAn's official repository.

seqan-library-feedstock

A conda-smithy repository for seqan-library.

seqan-std

Implementation of several C++23 views

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

seqan3-infrastructure

Infrastructure for seqan3 including nightly builds, continues integration, continues deployment, coverage tests, static code analysis and containerisation.

seqan3_read_mapper

sharg-parser

THE argument parser for bio-c++ tools.

shopping_cart_queue

smash-trial