NB: It is important to pay attention to which python version is required for each process
- Modeller scripts require python2
- PDB coordinate files retrieval script requires python3: Can be activated by running
. config.sh
Launch command line only
pymol -c
Launch command line and get help with a command
pymol -c -d 'help load'
Execute commands
pymol -c -d 'load 6VYB.pdb; indicate c. A; save 6VYB_chainA.pdb'
This loads a pdb coordinate file containing mltiple chains, selects the 'A' chain, and saves it
Keeping up with CASP