esohkevin / mds Goto Github PK

NB: It is important to pay attention to which python version is required for each process

• Modeller scripts require python2
• PDB coordinate files retrieval script requires python3: Can be activated by running . config.sh

Launch command line only

pymol -c

Launch command line and get help with a command

pymol -c -d 'help load'

Execute commands

pymol -c -d 'load 6VYB.pdb; indicate c. A; save 6VYB_chainA.pdb'

This loads a pdb coordinate file containing mltiple chains, selects the 'A' chain, and saves it

Keeping up with CASP

• FEIGLAB
  • MMTSB
• RaptorX
• I-TASSER
• ModRefine
• Residue contact prediction:
  • TripletRes
  • RaptorX-Contact