Analysis of Habib 2017 snRNAseq data

The up-to-date R Markdown HTML report can be found here. After downloading, it should be opened in a web browser.

In order to reproduce the report, prerequisite data must be downloaded from my Google Drive. After downloading and unzipping, move the directory to the project root and rename it as gdrive.

A Docker image for this project is available from DockerHub. This is the recommended way to reproduce and explore the project.

To run all scripts and generate an HTML report in the results directory, just run:

docker-compose run all

To open RStudio, run:

docker-compose up rstudio

It will be available in your web browser at the address localhost:8790.