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License: Apache License 2.0
Liquibase scripts for loading concepts into an i2b2 metadata schema
License: Apache License 2.0
The problem is, cardiac catheterization is called "Measurement of cardiac sampling and pressure" in ICD10PCS.
Need to add a changeset that updates the C_METADATA_XML for EK_UNIQUE_ID='LOINC:731-0' to:
'''
<?xml version="1.0"?><ValueMetadata><Version>3.02</Version><CreationDateTime>11/18/2005 14:53:37</CreationDateTime><TestID>ALYMPHS</TestID><TestName>Abs Lymphs Auto</TestName><DataType>PosFloat</DataType><CodeType>GRP</CodeType><Loinc>731-0</Loinc><Flagstouse>HL</Flagstouse><Oktousevalues></Oktousevalues><MaxStringLength></MaxStringLength><LowofLowValue>1.0</LowofLowValue><HighofLowValue>1.2</HighofLowValue><LowofHighValue>3.2</LowofHighValue><HighofHighValue>3.5</HighofHighValue><LowofToxicValue></LowofToxicValue><HighofToxicValue></HighofToxicValue><EnumValues></EnumValues><CommentsDeterminingExclusion><Com></Com></CommentsDeterminingExclusion><UnitValues><NormalUnits>k/mm3</NormalUnits><EqualUnits>k/cumm</EqualUnits><EqualUnits>k/uL</EqualUnits><EqualUnits>10^9/L</EqualUnits><ExcludingUnits>No Units</ExcludingUnits><ConvertingUnits><Units></Units><MultiplyingFactor></MultiplyingFactor></ConvertingUnits></UnitValues><Analysis><Enums /><Counts /><New /></Analysis></ValueMetadata>
'''
It acts like it were called i2b2.meta.phenotypesfolderenabled
. A value of false
causes the META-9 changeset in the i2b2-meta-schema-changelog.xml
changelog not to update. A value of true
causes META-9 to update.
See arpost/i2b2-etl#5 for a description.
This would be LOINC code 18262-6.
Is it 50 or 700?
There's a released 1.0 version of this module, so this needs to be added as a new changeset.
A query for "Age" should basically check for a non-null birthdate.
LOINC:16128-1 is not appearing in Eureka, even though it is in the metadata table. Appears to be because there is no entry for its parent, \ACT\Labs\LP14855-8\LP14400-3\LP38332-0. I see this in EK_LABS, but the same problem likely exists in the ACT metadata table. This is causing labs with this LOINC code not to load.
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