cnn-draw.io

dcnn-yy1

The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.

deep-walk

This repo will consist of famous algorithms used for graph embeddings

deepcap-kcr

deepenhancer-keras-

dlstm-sae

This is the pytorch implementation of DLSTM-SAE (for text generation)

dna-conv-net-

dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

dnabert-1

enhancer-gan

GANs to generate enhancer sequences (work in progress)

enhancer-gans

The repository contains the codes for the generation of Enhancer sequences with the help of convolution operations.

enhancer-non-enhancer-prediction

examples

extrachrosmosomal-dna-prediction

This repository contains codes for the prediction of extrachromosomal DNA prediction

fahtisham

fbgan

flow-based-generative-modeling

graph-neural-networks-

latext-based-enhancergan

The repository contains the codes for the generation of enhancer sequences using RNN and embedding concepts.

neural-machine-translation-using-gan

Application of rnn-gan to machine translation

neural-networks-codes

Here you will find implementation of neural networks. You can easily understand the architecture because comments have been associated with each line of code.

np-bert

NP-BERT is a method for identifying nucleosome positioning across 12 datasets. NP-BERT utilizes state of the art BERT models to learn features from the DNA sequences for nucleomse positioning predictions.

nucleosome-position-prediction

pirna-prediction

This repo contains the codes for pirna prediction

promoter-prediction

The repository contains codes related to Promoter Prediction using, CNN, lstm, Bert, ML classifier etc.

protein-crotonylation

The repository contains the codes to predict protein crotonylation, existing methods like DEEPKCR and performance values of existing approaches also have been provided here.

random-codes

Codes to preprocess biological data etc.

rpc-net

An implementation of the paper "A Robust and Precise ConvNet for Small Non-Coding RNA Classification (RPC-snRC)" DOI: 10.1109/ACCESS.2020.3037642

test-crispr

Course assignment (W2vec CRISPR)

word2vec-

Word2vec implementation in numpy