Ahtisham Fazeel's Projects
The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.
This repo will consist of famous algorithms used for graph embeddings
This is the pytorch implementation of DLSTM-SAE (for text generation)
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
GANs to generate enhancer sequences (work in progress)
The repository contains the codes for the generation of Enhancer sequences with the help of convolution operations.
This repository contains codes for the prediction of extrachromosomal DNA prediction
The repository contains the codes for the generation of enhancer sequences using RNN and embedding concepts.
Application of rnn-gan to machine translation
Here you will find implementation of neural networks. You can easily understand the architecture because comments have been associated with each line of code.
NP-BERT is a method for identifying nucleosome positioning across 12 datasets. NP-BERT utilizes state of the art BERT models to learn features from the DNA sequences for nucleomse positioning predictions.
This repo contains the codes for pirna prediction
The repository contains codes related to Promoter Prediction using, CNN, lstm, Bert, ML classifier etc.
The repository contains the codes to predict protein crotonylation, existing methods like DEEPKCR and performance values of existing approaches also have been provided here.
Codes to preprocess biological data etc.
An implementation of the paper "A Robust and Precise ConvNet for Small Non-Coding RNA Classification (RPC-snRC)" DOI: 10.1109/ACCESS.2020.3037642
Course assignment (W2vec CRISPR)
Word2vec implementation in numpy