fanagislab / gce Goto Github PK

I got the result in blow when i run the estimate_genome_character_real.pl:

The number of ranks within one unit of genomic frequency: 1
The automatically calculated lowfreq cutoff from P(x) is: 24
The estimated float-precision c by P(x) is: 92.6180714065804
The estimated integer-precision c by P(x) is: 92

The total number of kmer individuals is: 240097871172

The total number of nonadjusted-correct kmer individuals is: 240097871172

The total number of adjusted-correct kmer individuals is:
The px_peak_kmer_indivduals is: 2363674488
The px_leftToPeak_kmer_individuals is: 44879920004
The theoretic peak rate is: 1.9150168
The theoretic left to peak rate is: 32.5492343059264

The total number of adjusted erroneous kmers: 4704922723.11315
The total number of adjusted correct kmers: 235392948448.887

Estimated G and a[1]:
most rough : 2559583137 none
discreate model : 2542502182 0.799617
continuous model: 2541544483 0.79217472
but i dont know where is the result about the estimation of repeat and heterozygosity ,could you help me? thank you!

Hi there,
Thank you for developing GCE. I wonder if it would be possible to introduce paired-end reads to GCE where we have two separate files for forward and reverse sequences. How I should set them in the reads_files.lib file:
4211_1.fq.gz
4211_2.fq.gz
Is the above arrangement correct such that both of them can be read by software?
Thank you

Is quite intriguing to use this package as an alternative to genomescope. Thanks to the developers. However, i encountered some issues with installation that hindering me from proceeding with using the package for my analysis. Please could you help, thanks

INSTALLATION
Download the package and run

tar -xzvf gce.tar.gz
make (to build the executable file "gce")

Please i don't know the use of the make command because trying to compile using the make command pops up the message.
make: Nothing to be done for 'all'.

please how do i proceed to run the analysis

thanks in anticipation